what's your water temperature? I think the temp compensation is for water in the 60s and below.. not much of a summer problem.
Do you have a computer connected to your autoPilot or is it stand alone? It sounds like your trying to control the output percent at two places (Pilot console and a computer) and they're fighting each other.
Sean can probably speak to this possibility, but maybe you're using a computer and the serial circuit is noisy? Sean, is there a CRC?
I recommend you call AutoPiliot support tomorrow... they're very helpful.
Robert

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