I have a Hayward multiport valve which allows me to bypass the filter by placing it in the recirculate position. I continued to circulate the water without filtering. I believe the post by PoolDoc indicates that you should still add the bleach until the algae is dead if you are unable to recirculate.

The most important thing I did was obtain a test kit which allowed me to know exactly what my CYA and chlorine levels are. This was the only way to determine what the necessary "shock value" is for my CYA level. Once you hit that Free Chlorine number and keep it there for a couple of days the algae will die.

Good Luck.